IL_6FEC_055

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

6FEC|1|A|C|1211, 6FEC|1|A|C|1212

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FEC|1|A|C|1209
6FEC|1|A|A|1210
6FEC|1|A|C|1211
6FEC|1|A|C|1212
6FEC|1|A|A|1213
*
6FEC|1|A|U|1676
6FEC|1|A|C|1677
6FEC|1|A|C|1678
6FEC|1|A|C|1679
6FEC|1|A|U|1680
6FEC|1|A|G|1681

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S16

Chain U

40S ribosomal protein S5

Chain e

40S ribosomal protein S17

Chain l

40S ribosomal protein S28