IL_6FEC_073
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_073 not in the Motif Atlas
- Geometric match to IL_4J39_001
- Geometric discrepancy: 0.196
- The information below is about IL_4J39_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6FEC|1|A|A|1532
6FEC|1|A|C|1533
6FEC|1|A|U|1534
*
6FEC|1|A|A|1589
6FEC|1|A|U|1590
6FEC|1|A|U|1591
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S16
- Chain L
- 40S ribosomal protein S18
- Chain R
- 40S ribosomal protein S19
- Chain U
- 40S ribosomal protein S5
- Chain W
- 40S ribosomal protein S25
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