IL_6FEC_090

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UGGUUCCUUU*AUUCGAA

Length

17 nucleotides

Bulged bases

6FEC|1|A|G|113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FEC|1|A|U|112
6FEC|1|A|G|113
6FEC|1|A|G|114
6FEC|1|A|U|115
6FEC|1|A|U|116
6FEC|1|A|C|117
6FEC|1|A|C|118
6FEC|1|A|U|119
6FEC|1|A|U|120
6FEC|1|A|U|121
*
6FEC|1|A|A|333
6FEC|1|A|U|334
6FEC|1|A|U|335
6FEC|1|A|C|336
6FEC|1|A|G|337
6FEC|1|A|A|338
6FEC|1|A|A|339

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S11

Chain I

40S ribosomal protein S4, X isoform

Chain o

40S ribosomal protein S8