IL_6FEC_094

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

6FEC|1|A|U|597

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FEC|1|A|A|589
6FEC|1|A|G|590
6FEC|1|A|G|591
6FEC|1|A|G|592
6FEC|1|A|C|593
6FEC|1|A|A|594
6FEC|1|A|A|595
6FEC|1|A|G|596
6FEC|1|A|U|597
6FEC|1|A|C|598
*
6FEC|1|A|G|625
6FEC|1|A|C|626
6FEC|1|A|U|627

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

Messenger RNA (26-MER)

Chain K

40S ribosomal protein S9

Chain V

40S ribosomal protein S30

Chain c

40S ribosomal protein S2

Chain g

40S ribosomal protein S3