IL_6FEC_096
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_096 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3721
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6FEC|1|A|G|803
6FEC|1|A|A|804
6FEC|1|A|A|805
6FEC|1|A|A|806
6FEC|1|A|A|807
6FEC|1|A|A|808
6FEC|1|A|A|809
6FEC|1|A|U|810
6FEC|1|A|U|811
*
6FEC|1|A|A|845
6FEC|1|A|C|846
6FEC|1|A|C|847
6FEC|1|A|G|848
6FEC|1|A|C|849
6FEC|1|A|A|850
6FEC|1|A|G|851
6FEC|1|A|C|852
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain I
- 40S ribosomal protein S4, X isoform
- Chain K
- 40S ribosomal protein S9
- Chain a
- 40S ribosomal protein S15a
Coloring options: