IL_6FEC_100
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6FEC|1|A|C|1149, 6FEC|1|A|U|1151, 6FEC|1|A|G|1153
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_100 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.2702
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FEC|1|A|C|1087
6FEC|1|A|G|1088
6FEC|1|A|A|1089
*
6FEC|1|A|U|1148
6FEC|1|A|C|1149
6FEC|1|A|U|1150
6FEC|1|A|U|1151
6FEC|1|A|U|1152
6FEC|1|A|G|1153
6FEC|1|A|G|1154
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain Q
- 40S ribosomal protein S23
- Chain Z
- 40S ribosomal protein S13
- Chain a
- 40S ribosomal protein S15a
- Chain b
- 40S ribosomal protein S21
- Chain c
- 40S ribosomal protein S2
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