IL_6FEC_105

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_105 not in the Motif Atlas

Homologous match to IL_8P9A_457

Geometric discrepancy: 0.209

The information below is about IL_8P9A_457

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6FEC|1|A|C|1712
6FEC|1|A|G|1713
6FEC|1|A|A|1714
6FEC|1|A|U|1715
*
6FEC|1|A|A|1807
6FEC|1|A|G|1808
6FEC|1|A|A|1809
6FEC|1|A|G|1810

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S23