IL_6FEC_111

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6FEC|1|A|U|1012

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_111 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.32

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6FEC|1|A|G|921
6FEC|1|A|A|922
*
6FEC|1|A|U|1011
6FEC|1|A|U|1012
6FEC|1|A|U|1013

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S27

Chain Z

40S ribosomal protein S13

Chain a

40S ribosomal protein S15a