IL_6FEC_112

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6FEC|1|A|A|1690

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_112 not in the Motif Atlas

Homologous match to IL_8CRE_443

Geometric discrepancy: 0.2967

The information below is about IL_8CRE_443

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6FEC|1|A|G|1199
6FEC|1|A|A|1200
*
6FEC|1|A|U|1689
6FEC|1|A|A|1690
6FEC|1|A|C|1691

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S2

Chain k

40S ribosomal protein S26