IL_6FF4_001

3D structure

PDB id

6FF4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human Bact spliceosome core structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

6FF4|1|Z|A|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FF4_001 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.3665

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6FF4|1|2|G|33
6FF4|1|2|U|34
*
6FF4|1|Z|G|393
6FF4|1|Z|A|394
6FF4|1|Z|C|395

Current chains

Chain 2

U2 snRNA

Chain Z

pre mRNA

Nearby chains

Chain u

Splicing factor 3B subunit 1

Chain y

PHD finger-like domain-containing protein 5A