6FF4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6FF4_001 | 1/2/52:61 | No text annotation | ||
| HL_6FF4_002 | 1/5/37:45 | No text annotation | ||
| HL_6FF4_004 | 1/6/64:70 | GNRA | homologous HL_6ASO_001 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6FF4_003 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6FF4_011 | 1/2/22:25, 1/6/52:53 | No text annotation | ||
| IL_6FF4_001 | 1/2/33:34, 1/Z/393:395 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_6FF4_002 | 1/2/38:41, 1/Z/386:389 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_71194.1 | |
| IL_6FF4_012 | 1/5/19:23, 1/5/57:58 | No text annotation | ||
| IL_6FF4_004 | 1/5/24:28, 1/5/54:56 | No text annotation | ||
| IL_6FF4_005 | 1/5/35:37, 1/5/45:47 | No text annotation | ||
| IL_6FF4_007 | 1/6/34:38, 1/Z/251:255 | No text annotation | ||
| IL_6FF4_008 | 1/6/58:61, 1/6/75:77 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 NA | |
| IL_6FF4_009 | 1/6/61:62, 1/6/72:75 | Multiple bulged bases | geometric IL_7RQB_098 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6FF4_010 | No text annotation | ||
| IL_6FF4_003 | No text annotation | ||
| IL_6FF4_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6FF4_001 | 1/2/12:20, 1/6/55:57, 1/6/78:86 | No text annotation |
Problematic loops
No problematic loops
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