IL_6FF4_009
3D structure
- PDB id
- 6FF4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human Bact spliceosome core structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 6FF4|1|6|A|73, 6FF4|1|6|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FF4_009 not in the Motif Atlas
- Geometric match to IL_7RQB_098
- Geometric discrepancy: 0.135
- The information below is about IL_7RQB_098
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71530.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6FF4|1|6|C|61
6FF4|1|6|C|62
*
6FF4|1|6|G|72
6FF4|1|6|A|73
6FF4|1|6|U|74
6FF4|1|6|G|75
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 2
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain 7
- Splicing factor 3A subunit 2
- Chain 8
- Splicing factor 3B subunit 2
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain C
- SNW domain-containing protein 1
- Chain O
- Crooked neck-like protein 1
- Chain P
- Pre-mRNA-splicing factor RBM22
- Chain Z
- pre mRNA
Coloring options: