IL_6FKR_022
3D structure
- PDB id
- 6FKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 6FKR|1|1A|G|776, 6FKR|1|1A|A|788, 6FKR|1|1A|A|789, 6FKR|1|1A|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FKR_022 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.1119
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6FKR|1|1A|G|775
6FKR|1|1A|G|776
6FKR|1|1A|A|777
*
6FKR|1|1A|U|787
6FKR|1|1A|A|788
6FKR|1|1A|A|789
6FKR|1|1A|C|790
6FKR|1|1A|C|791
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1D
- 50S ribosomal protein L2
- Chain 1F
- 50S ribosomal protein L4
- Chain 1W
- 50S ribosomal protein L22
- Chain 1y
- Tur1A peptide
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