IL_6FKR_044

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6FKR|1|1A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_044 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0617

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6FKR|1|1A|C|1208
6FKR|1|1A|G|1209
6FKR|1|1A|A|1210
6FKR|1|1A|U|1211
6FKR|1|1A|G|1212
6FKR|1|1A|A|1213
6FKR|1|1A|A|1214
6FKR|1|1A|G|1215
*
6FKR|1|1A|U|1234
6FKR|1|1A|G|1235
6FKR|1|1A|G|1236
6FKR|1|1A|A|1237
6FKR|1|1A|G|1238

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20