IL_6FKR_104
3D structure
- PDB id
- 6FKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FKR_104 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.1579
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6FKR|1|1A|G|2737
6FKR|1|1A|A|2738
6FKR|1|1A|U|2739
6FKR|1|1A|A|2740
6FKR|1|1A|A|2741
6FKR|1|1A|C|2742
*
6FKR|1|1A|G|2762
6FKR|1|1A|G|2763
6FKR|1|1A|A|2764
6FKR|1|1A|A|2765
6FKR|1|1A|G|2766
6FKR|1|1A|C|2767
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
- Chain 1N
- 50S ribosomal protein L13
Coloring options: