IL_6FKR_147

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

6FKR|1|1a|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_147 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2596

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6FKR|1|1a|U|921
6FKR|1|1a|G|922
6FKR|1|1a|A|923
*
6FKR|1|1a|U|1393
6FKR|1|1a|A|1394
6FKR|1|1a|C|1395
6FKR|1|1a|A|1396

Current chains

Chain 1a

16 ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5