IL_6FKR_166

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6FKR|1|1a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_166 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0733

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6FKR|1|1a|C|1399
6FKR|1|1a|5MC|1400
6FKR|1|1a|G|1401
*
6FKR|1|1a|C|1501
6FKR|1|1a|A|1502
6FKR|1|1a|A|1503
6FKR|1|1a|G|1504

Current chains

Chain 1a

16 ribosomal RNA

Nearby chains

Chain 1z

Ribosome-associated inhibitor A