IL_6FKR_191

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6FKR|1|2A|G|801, 6FKR|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_191 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0594

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6FKR|1|2A|G|674
6FKR|1|2A|A|675
6FKR|1|2A|A|676
6FKR|1|2A|A|677
6FKR|1|2A|C|678
*
6FKR|1|2A|G|799
6FKR|1|2A|A|800
6FKR|1|2A|G|801
6FKR|1|2A|A|802
6FKR|1|2A|U|803
6FKR|1|2A|A|804
6FKR|1|2A|G|805
6FKR|1|2A|C|806

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15