IL_6FKR_227

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6FKR|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_227 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0835

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6FKR|1|2A|C|1417
6FKR|1|2A|G|1418
6FKR|1|2A|A|1419
6FKR|1|2A|U|1420
6FKR|1|2A|G|1421
*
6FKR|1|2A|C|1577
6FKR|1|2A|U|1578
6FKR|1|2A|A|1579
6FKR|1|2A|A|1580
6FKR|1|2A|G|1581

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains