IL_6FKR_229

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

6FKR|1|2A|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_229 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0902

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6FKR|1|2A|C|1437
6FKR|1|2A|U|1438
6FKR|1|2A|A|1439
6FKR|1|2A|G|1440
*
6FKR|1|2A|C|1551
6FKR|1|2A|G|1552
6FKR|1|2A|A|1553
6FKR|1|2A|A|1554
6FKR|1|2A|G|1555

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains