IL_6FKR_235

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6FKR|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_235 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0744

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6FKR|1|2A|G|1526
6FKR|1|2A|G|1527
6FKR|1|2A|A|1528
6FKR|1|2A|A|1528|||A
6FKR|1|2A|G|1529
*
6FKR|1|2A|U|1540
6FKR|1|2A|G|1541
6FKR|1|2A|A|1542
6FKR|1|2A|C|1543
6FKR|1|2A|A|1544
6FKR|1|2A|A|1545
6FKR|1|2A|C|1546

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains