IL_6FKR_300

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6FKR|1|2a|U|244, 6FKR|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_300 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0825

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6FKR|1|2a|C|242
6FKR|1|2a|A|243
6FKR|1|2a|U|244
6FKR|1|2a|C|245
6FKR|1|2a|A|246
6FKR|1|2a|G|247
*
6FKR|1|2a|C|277
6FKR|1|2a|G|278
6FKR|1|2a|A|279
6FKR|1|2a|C|280
6FKR|1|2a|G|281
6FKR|1|2a|A|282
6FKR|1|2a|C|283
6FKR|1|2a|G|284

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17