IL_6FRK_003

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_003 not in the Motif Atlas

Geometric match to IL_4LFB_053

Geometric discrepancy: 0.3103

The information below is about IL_4LFB_053

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_58310.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

25

Unit IDs

6FRK|1|1|G|91
6FRK|1|1|C|92
6FRK|1|1|G|93
*
6FRK|1|1|C|257
6FRK|1|1|C|258

Current chains

Chain 1

Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA

Nearby chains