IL_6FRK_007

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_007 not in the Motif Atlas

Homologous match to IL_1MFQ_004

Geometric discrepancy: 0.1669

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6FRK|1|1|G|138
6FRK|1|1|A|139
6FRK|1|1|C|140
6FRK|1|1|C|141
*
6FRK|1|1|G|156
6FRK|1|1|A|157
6FRK|1|1|C|158
6FRK|1|1|C|159

Current chains

Chain 1

Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA

Nearby chains

Chain q

Signal recognition particle subunit SRP19