IL_6FRK_008

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6FRK|1|1|A|176

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_008 not in the Motif Atlas

Geometric match to IL_6D3P_004

Geometric discrepancy: 0.3041

The information below is about IL_6D3P_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6FRK|1|1|G|175
6FRK|1|1|A|176
6FRK|1|1|G|177
*
6FRK|1|1|C|220
6FRK|1|1|C|221

Current chains

Chain 1

Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA

Nearby chains

Chain u

Signal recognition particle subunit SRP68

Chain x

Signal recognition particle 54 kDa protein