IL_6FRK_029
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FRK_029 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0775
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6FRK|1|5|G|415
6FRK|1|5|U|416
6FRK|1|5|G|417
6FRK|1|5|A|418
6FRK|1|5|A|419
6FRK|1|5|A|420
6FRK|1|5|C|421
*
6FRK|1|8|G|13
6FRK|1|8|U|14
6FRK|1|8|G|15
6FRK|1|8|G|16
6FRK|1|8|A|17
6FRK|1|8|U|18
6FRK|1|8|C|19
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain P
- Ribosomal protein uL22
- Chain e
- Ribosomal protein eL32
Coloring options: