IL_6FRK_034

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_034 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.2775

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6FRK|1|5|G|482
6FRK|1|5|G|483
6FRK|1|5|U|484
6FRK|1|5|C|485
6FRK|1|5|C|486
*
6FRK|1|5|G|670
6FRK|1|5|G|671
6FRK|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Ribosomal protein eL28