IL_6FRK_039

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6FRK|1|5|C|502, 6FRK|1|5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_039 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2157

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6FRK|1|5|G|500
6FRK|1|5|C|501
6FRK|1|5|C|502
6FRK|1|5|C|503
6FRK|1|5|G|504
6FRK|1|5|G|505
*
6FRK|1|5|U|653
6FRK|1|5|C|654

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain Q

Ribosomal protein eL18

Chain a

Ribosomal protein uL15