IL_6FRK_039
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCCGG*UC
- Length
- 8 nucleotides
- Bulged bases
- 6FRK|1|5|C|502, 6FRK|1|5|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FRK_039 not in the Motif Atlas
- Geometric match to IL_4V9F_005
- Geometric discrepancy: 0.2157
- The information below is about IL_4V9F_005
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_90729.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 30
Unit IDs
6FRK|1|5|G|500
6FRK|1|5|C|501
6FRK|1|5|C|502
6FRK|1|5|C|503
6FRK|1|5|G|504
6FRK|1|5|G|505
*
6FRK|1|5|U|653
6FRK|1|5|C|654
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain Q
- Ribosomal protein eL18
- Chain a
- Ribosomal protein uL15
Coloring options: