IL_6FRK_042

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

6FRK|1|5|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_042 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.3507

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6FRK|1|5|G|708
6FRK|1|5|C|709
*
6FRK|1|5|G|1287
6FRK|1|5|G|1288
6FRK|1|5|C|1289

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eL6

Chain f

Ribosomal protein eL33