IL_6FRK_049

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_049 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.3253

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6FRK|1|5|U|750
6FRK|1|5|G|751
6FRK|1|5|G|752
6FRK|1|5|C|753
*
6FRK|1|5|G|910
6FRK|1|5|U|911
6FRK|1|5|G|912

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain M

Ribosomal protein eL14

Chain S

Ribosomal protein eL20