IL_6FRK_054

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUCC*GGCCCG

Length

10 nucleotides

Bulged bases

6FRK|1|5|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_054 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3981

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6FRK|1|5|C|1082
6FRK|1|5|U|1083
6FRK|1|5|C|1084
6FRK|1|5|C|1085
*
6FRK|1|5|G|1212
6FRK|1|5|G|1213
6FRK|1|5|C|1214
6FRK|1|5|C|1215
6FRK|1|5|C|1216
6FRK|1|5|G|1217

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uL30