3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUCC*GGCCCG
Length
10 nucleotides
Bulged bases
6FRK|1|5|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_054 not in the Motif Atlas
Geometric match to IL_7KJT_003
Geometric discrepancy: 0.3981
The information below is about IL_7KJT_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
56

Unit IDs

6FRK|1|5|C|1082
6FRK|1|5|U|1083
6FRK|1|5|C|1084
6FRK|1|5|C|1085
*
6FRK|1|5|G|1212
6FRK|1|5|G|1213
6FRK|1|5|C|1214
6FRK|1|5|C|1215
6FRK|1|5|C|1216
6FRK|1|5|G|1217

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain F
Ribosomal protein uL30

Coloring options:


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