IL_6FRK_060

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_060 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1585

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6FRK|1|5|C|1431
6FRK|1|5|G|1432
6FRK|1|5|A|1433
6FRK|1|5|G|1434
*
6FRK|1|5|C|1450
6FRK|1|5|G|1451
6FRK|1|5|A|1452
6FRK|1|5|G|1453

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein eL18