IL_6FRK_062

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_062 not in the Motif Atlas

Geometric match to IL_5IBB_340

Geometric discrepancy: 0.2672

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6FRK|1|5|C|1474
6FRK|1|5|G|1475
6FRK|1|5|C|1476
*
6FRK|1|5|G|1489
6FRK|1|5|G|1490

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain a

Ribosomal protein uL15

Chain b

60S ribosomal protein L29

Chain o

Ribosomal protein eL42