IL_6FRK_081

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_081 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.088

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6FRK|1|5|U|1861
6FRK|1|5|U|1862
6FRK|1|5|U|1863
*
6FRK|1|5|A|1871
6FRK|1|5|G|1872
6FRK|1|5|A|1873

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain I

Ribosomal protein uL16

Chain b

60S ribosomal protein L29