IL_6FRK_088
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGUG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 6FRK|1|5|U|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FRK_088 not in the Motif Atlas
- Geometric match to IL_7A0S_044
- Geometric discrepancy: 0.3604
- The information below is about IL_7A0S_044
- Detailed Annotation
- Intercalated cWW
- Broad Annotation
- Intercalated cWW
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6FRK|1|5|G|1945
6FRK|1|5|G|1946
6FRK|1|5|U|1947
6FRK|1|5|G|1948
*
6FRK|1|5|C|2035
6FRK|1|5|C|2036
6FRK|1|5|C|2037
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain H
- Ribosomal protein uL6
- Chain I
- Ribosomal protein uL16
- Chain O
- Ribosomal protein uL13
- Chain S
- Ribosomal protein eL20
- Chain m
- Ribosomal protein eL40
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