3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
6FRK|1|5|G|1975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_090 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.5514
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6FRK|1|5|G|1973
6FRK|1|5|U|1974
6FRK|1|5|G|1975
6FRK|1|5|G|1976
6FRK|1|5|C|1977
*
6FRK|1|5|G|1989
6FRK|1|5|A|1990
6FRK|1|5|A|1991
6FRK|1|5|U|1992
6FRK|1|5|C|1993

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 4
Ribosomal protein L12
Chain 6
60S acidic ribosomal protein P0
Chain I
Ribosomal protein uL16

Coloring options:


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