3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
6FRK|1|5|A|2002
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_091 not in the Motif Atlas
Homologous match to IL_8C3A_059
Geometric discrepancy: 0.205
The information below is about IL_8C3A_059
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

6FRK|1|5|G|2001
6FRK|1|5|A|2002
6FRK|1|5|G|2003
6FRK|1|5|U|2004
6FRK|1|5|G|2005
*
6FRK|1|5|C|2014
6FRK|1|5|U|2015
6FRK|1|5|C|2016

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 4
Ribosomal protein L12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.14 s