3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCG*CG
Length
5 nucleotides
Bulged bases
6FRK|1|5|C|2084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_092 not in the Motif Atlas
Geometric match to IL_3W3S_001
Geometric discrepancy: 0.3487
The information below is about IL_3W3S_001
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

6FRK|1|5|C|2083
6FRK|1|5|C|2084
6FRK|1|5|G|2085
*
6FRK|1|5|C|2272
6FRK|1|5|G|2273

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
Ribosomal protein uL4
Chain F
Ribosomal protein uL30
Chain Q
Ribosomal protein eL18
Chain e
Ribosomal protein eL32

Coloring options:


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