IL_6FRK_092

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6FRK|1|5|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_092 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.3487

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6FRK|1|5|C|2083
6FRK|1|5|C|2084
6FRK|1|5|G|2085
*
6FRK|1|5|C|2272
6FRK|1|5|G|2273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain F

Ribosomal protein uL30

Chain Q

Ribosomal protein eL18

Chain e

Ribosomal protein eL32