IL_6FRK_098

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

6FRK|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_098 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2394

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6FRK|1|5|U|2415
6FRK|1|5|G|2416
6FRK|1|5|A|2417
6FRK|1|5|A|2418
6FRK|1|5|C|2419
*
6FRK|1|5|G|2427
6FRK|1|5|A|2428
6FRK|1|5|A|2429

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uL22

Chain R

Ribosomal protein eL19

Chain l

Ribosomal protein eL39