IL_6FRK_103

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6FRK|1|5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_103 not in the Motif Atlas

Geometric match to IL_3MJA_001

Geometric discrepancy: 0.3473

The information below is about IL_3MJA_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

6FRK|1|5|C|2613
6FRK|1|5|C|2614
*
6FRK|1|5|G|2724
6FRK|1|5|A|2725
6FRK|1|5|G|2726

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain g

Ribosomal protein eL34