3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
6FRK|1|5|G|3839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_112 not in the Motif Atlas
Geometric match to IL_5J7L_307
Geometric discrepancy: 0.2152
The information below is about IL_5J7L_307
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6FRK|1|5|A|2850
6FRK|1|5|G|2851
6FRK|1|5|U|2852
6FRK|1|5|C|2853
6FRK|1|5|G|2854
6FRK|1|5|G|2855
*
6FRK|1|5|C|3837
6FRK|1|5|U|3838
6FRK|1|5|G|3839
6FRK|1|5|U|3840

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain V
Ribosomal protein L23

Coloring options:


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