IL_6FRK_146

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

6FRK|1|5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_146 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3807

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

6FRK|1|5|U|4468
6FRK|1|5|U|4469
6FRK|1|5|G|4470
*
6FRK|1|5|C|4485
6FRK|1|5|C|4486
6FRK|1|5|A|4487
6FRK|1|5|A|4488
6FRK|1|5|G|4489

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain O

Ribosomal protein uL13

Chain m

Ribosomal protein eL40