IL_6FRK_155

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_155 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.1711

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6FRK|1|5|U|4638
6FRK|1|5|G|4639
6FRK|1|5|C|4640
*
6FRK|1|5|G|4659
6FRK|1|5|G|4660
6FRK|1|5|G|4661

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain W

Ribosomal protein eL24

Chain d

Ribosomal protein eL31