3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAUUAU*AGAAUC
Length
12 nucleotides
Bulged bases
6FRK|1|5|A|4708
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_157 not in the Motif Atlas
Geometric match to IL_7RQB_107
Geometric discrepancy: 0.2516
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6FRK|1|5|G|4680
6FRK|1|5|A|4681
6FRK|1|5|U|4682
6FRK|1|5|U|4683
6FRK|1|5|A|4684
6FRK|1|5|U|4685
*
6FRK|1|5|A|4705
6FRK|1|5|G|4706
6FRK|1|5|A|4707
6FRK|1|5|A|4708
6FRK|1|5|U|4709
6FRK|1|5|C|4710

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
Ribosomal protein uL6
Chain O
Ribosomal protein uL13
Chain m
Ribosomal protein eL40

Coloring options:


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