3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCCUCGGAUAGC*GUGCGGAGUGC
Length
23 nucleotides
Bulged bases
6FRK|1|5|C|4756, 6FRK|1|5|C|4757, 6FRK|1|5|U|4763, 6FRK|1|5|C|4871, 6FRK|1|5|G|4872, 6FRK|1|5|A|4874, 6FRK|1|5|G|4877
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FRK|1|5|G|4755
6FRK|1|5|C|4756
6FRK|1|5|C|4757
6FRK|1|5|U|4758
6FRK|1|5|C|4759
6FRK|1|5|G|4760
6FRK|1|5|G|4761
6FRK|1|5|A|4762
6FRK|1|5|U|4763
6FRK|1|5|A|4764
6FRK|1|5|G|4765
6FRK|1|5|C|4766
*
6FRK|1|5|G|4868
6FRK|1|5|U|4869
6FRK|1|5|G|4870
6FRK|1|5|C|4871
6FRK|1|5|G|4872
6FRK|1|5|G|4873
6FRK|1|5|A|4874
6FRK|1|5|G|4875
6FRK|1|5|U|4876
6FRK|1|5|G|4877
6FRK|1|5|C|4878

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain E
Ribosomal protein eL6
Chain H
Ribosomal protein uL6
Chain M
Ribosomal protein eL14
Chain O
Ribosomal protein uL13
Chain S
Ribosomal protein eL20

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2704 s