IL_6FRK_161

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCCU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_161 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2956

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6FRK|1|5|U|4885
6FRK|1|5|C|4886
6FRK|1|5|C|4887
6FRK|1|5|U|4888
*
6FRK|1|5|G|4931
6FRK|1|5|U|4932
6FRK|1|5|C|4933
6FRK|1|5|A|4934

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eL6

Chain M

Ribosomal protein eL14

Chain f

Ribosomal protein eL33