3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CG*UCG
Length
5 nucleotides
Bulged bases
6FRK|1|5|C|5054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_165 not in the Motif Atlas
Homologous match to IL_8C3A_137
Geometric discrepancy: 0.5662
The information below is about IL_8C3A_137
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6FRK|1|5|C|4996
6FRK|1|5|G|4997
*
6FRK|1|5|U|5053
6FRK|1|5|C|5054
6FRK|1|5|G|5055

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain d
Ribosomal protein eL31
Chain r
Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72
Chain x
Signal recognition particle 54 kDa protein

Coloring options:


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