3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AUGCCGAUCGGGUGUC*GAUCGCGCCUGUGAAU
Length
32 nucleotides
Bulged bases
6FRK|1|1|C|100, 6FRK|1|1|G|101, 6FRK|1|1|C|242, 6FRK|1|1|A|252
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FRK|1|1|A|96
6FRK|1|1|U|97
6FRK|1|1|G|98
6FRK|1|1|C|99
6FRK|1|1|C|100
6FRK|1|1|G|101
6FRK|1|1|A|102
6FRK|1|1|U|103
6FRK|1|1|C|104
6FRK|1|1|G|105
6FRK|1|1|G|106
6FRK|1|1|G|107
6FRK|1|1|U|108
6FRK|1|1|G|109
6FRK|1|1|U|110
6FRK|1|1|C|111
*
6FRK|1|1|G|239
6FRK|1|1|A|240
6FRK|1|1|U|241
6FRK|1|1|C|242
6FRK|1|1|G|243
6FRK|1|1|C|244
6FRK|1|1|G|245
6FRK|1|1|C|246
6FRK|1|1|C|247
6FRK|1|1|U|248
6FRK|1|1|G|249
6FRK|1|1|U|250
6FRK|1|1|G|251
6FRK|1|1|A|252
6FRK|1|1|A|253
6FRK|1|1|U|254

Current chains

Chain 1
Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA

Nearby chains

Chain r
Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72
Chain u
Signal recognition particle subunit SRP68
Chain y
SRP receptor alpha subunit

Coloring options:

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