3D structure

PDB id
6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UCAAAGU*AACCAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FT6_075 not in the Motif Atlas
Homologous match to IL_8C3A_093
Geometric discrepancy: 0.1345
The information below is about IL_8C3A_093
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36973.8
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6FT6|1|1|U|2211
6FT6|1|1|C|2212
6FT6|1|1|A|2213
6FT6|1|1|A|2214
6FT6|1|1|A|2215
6FT6|1|1|G|2216
6FT6|1|1|U|2217
*
6FT6|1|1|A|2228
6FT6|1|1|A|2229
6FT6|1|1|C|2230
6FT6|1|1|C|2231
6FT6|1|1|A|2232
6FT6|1|1|A|2233
6FT6|1|1|G|2234

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain i
60S ribosomal protein L36-A

Coloring options:


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