IL_8C3A_093

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8C3A|1|1|U|2189
8C3A|1|1|C|2190
8C3A|1|1|A|2191
8C3A|1|1|A|2192
8C3A|1|1|A|2193
8C3A|1|1|G|2194
8C3A|1|1|U|2195
*
8C3A|1|1|A|2206
8C3A|1|1|A|2207
8C3A|1|1|C|2208
8C3A|1|1|C|2209
8C3A|1|1|A|2210
8C3A|1|1|A|2211
8C3A|1|1|G|2212

Current chains

Chain 1

25S

Nearby chains

Chain AJ

60S ribosomal protein L36

Chain AP

60S ribosomal protein L42-B